15 citations · 26 across the 5 of their papers we have counts for
6 papers
Constrained Consensus Sequence Algorithm for DNA Archiving
Dominique Lavenier
The paper describes an algorithm to compute a consensus sequence from a set of DNA sequences of approximatively identical length generated by 3rd sequencing generation technologies…
Statistically Significant Discriminative Patterns Searching
Hoang Son Pham, Gwendal Virlet, Dominique Lavenier +1
Discriminative pattern mining is an essential task of data mining. This task aims to discover patterns which occur more frequently in a class than other classes in a class-labeled…
Multiple Comparative Metagenomics using Multiset k-mer Counting
Gaëtan Benoit, Pierre Peterlongo, Mahendra Mariadassou +4
Background. Large scale metagenomic projects aim to extract biodiversity knowledge between different environmental conditions. Current methods for comparing microbial communities f…
Commet: comparing and combining multiple metagenomic datasets
Maillet Nicolas, Collet Guillaume, Vanier Thomas +2
Metagenomics offers a way to analyze biotopes at the genomic level and to reach functional and taxonomical conclusions. The bio-analyzes of large metagenomic projects face critical…
Compression of high throughput sequencing data with probabilistic de Bruijn graph
Gaëtan Benoit, Claire Lemaitre, Dominique Lavenier +1
Motivation: Data volumes generated by next-generation sequencing technolo- gies is now a major concern, both for storage and transmission. This triggered the need for more efficien…
Fine-grained parallelization of similarity search between protein sequences
Van Hoa Nguyen, Dominique Lavenier
This report presents the implementation of a protein sequence comparison algorithm specifically designed for speeding up time consuming part on parallel hardware such as SSE instru…