4 papers
PhylaFlow: Hybrid Flow Matching in Billera-Holmes-Vogtmann Tree Space for Phylogenetic Inference
Yasha Ektefaie, Leo Cui, Shrey Jain +2
Phylogenetic trees are hybrid objects: branch lengths vary continuously, while topologies change discretely through edge contractions and expansions. Billera-Holmes-Vogtmann (BHV)…
CancerGUIDE: Cancer Guideline Understanding via Internal Disagreement Estimation
Alyssa Unell, Noel C. F. Codella, Sam Preston +13
The National Comprehensive Cancer Network (NCCN) provides evidence-based guidelines for cancer treatment. Translating complex patient presentations into guideline-compliant treatme…
Universal Abstraction: Harnessing Frontier Models to Structure Real-World Data at Scale
Cliff Wong, Sam Preston, Qianchu Liu +22
A significant fraction of real-world patient information resides in unstructured clinical text. Medical abstraction extracts and normalizes key structured attributes from free-text…
MedImageInsight: An Open-Source Embedding Model for General Domain Medical Imaging
Noel C. F. Codella, Ying Jin, Shrey Jain +28
In this work, we present MedImageInsight, an open-source medical imaging embedding model. MedImageInsight is trained on medical images with associated text and labels across a dive…