139 citations · 444 across the 30 of their papers we have counts for
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Two-Dimensional Active Brownian Particles Crossing a Parabolic Barrier: Transition-Path Times, Survival Probability, and First-Passage Time
Michele Caraglio
We derive an analytical expression for the propagator and the transition path time distribution of a two-dimensional active Brownian particle crossing a parabolic barrier with abso…
Two-Dimensional Active Brownian Particles Crossing a Parabolic Barrier: Finite Rectangular Domain with Absorbing Boundary Conditions
Michele Caraglio
We solve the time-dependent Fokker-Planck equation for a two-dimensional active Brownian particle exploring a rectangular domain with absorbing boundary and in the presence of a pa…
Active Brownian Particles in a Circular Disk with an Absorbing Boundary
Francesco Di Trapani, Thomas Franosch, Michele Caraglio
We solve the time-dependent Fokker-Planck equation for a two-dimensional active Brownian particle exploring a circular region with an absorbing boundary. Using the passive Brownian…
Topological disentanglement of linear polymers under tension
Michele Caraglio, Boris Marcone, Fulvio Baldovin +2
We develop a theoretical description of the topological disentanglement occurring when torus knots reach the ends of a semi-flexible polymer under tension. These include decays int…
Emergence of effective temperatures in an out-of-equilibrium model of biopolymer folding
Marco Ancona, Alessandro Bentivoglio, Michele Caraglio +2
We investigate the possibility of extending the notion of temperature in a stochastic model for the RNA/protein folding driven out of equilibrium. We simulate the dynamics of a sma…
Translocation of links through a pore: effects of link complexity and size
Michele Caraglio, Enzo Orlandini, Stuart G Whittington
We have used Langevin dynamics to simulate the forced translocation of linked polymer rings through a narrow pore. For fixed size (i.e. fixed number of monomers) the translocation…
Transition Path Times in Asymmetric Barriers
Michele Caraglio, Takahiro Sakaue, Enrico Carlon
Biomolecular conformational transitions are usually modeled as barrier crossings in a free energy landscape. The transition paths connect two local free energy minima and transitio…
The influence of absorbing boundary conditions on the transition path times statistics
Michele Caraglio, Stefanie Put, Enrico Carlon +1
We derive an analytical expression for the transition path time (TPT) distribution for a one-dimensional particle crossing a parabolic barrier. The solution is expressed in terms o…