86 citations · 450 across the 18 of their papers we have counts for
9 papers · 1 filter
Biologically relevant finite-size effects in a driven lattice gas with particle pausing and dynamical defects
Johannes Keisers, Lorenzo Vito Dal Zovo, Norbert Kern +1
In this article we present a comprehensive study of the totally asymmetric simple exclusion process with pausing particles (pTASEP), a model initially introduced to describe RNAP d…
TASEPy: a Python-based package to iteratively solve the inhomogeneous exclusion process
Luca Ciandrini, Richmond L. Crisostomo, Juraj Szavits-Nossan
The totally asymmetric simple exclusion process (TASEP) is a paradigmatic lattice model for one-dimensional particle transport subject to excluded-volume interactions. Solving the…
Exclusion process subject to conformational size changes
Yvan Rousset, Luca Ciandrini, Norbert Kern
We introduce a model for stochastic transport on a one-dimensional substrate with particles assuming different conformations during their stepping cycles. These conformations corre…
Driven transport on a flexible polymer with particle recycling: a model inspired by transcription and translation
Lucas D. Fernandes, Luca Ciandrini
Many theoretical works have attempted to coarse grain gene expression at the level of transcription and translation via frameworks based on exclusion processes. Usually in these mo…
Power series solution of the inhomogeneous exclusion process
Juraj Szavits-Nossan, M. Carmen Romano, Luca Ciandrini
We develop a power series method for the nonequilibrium steady state of the inhomogeneous one-dimensional totally asymmetric simple exclusion process (TASEP) in contact with two pa…
Transport on a Lattice with Dynamical Defects
Francesco Turci, Andrea Parmeggiani, Estelle Pitard +2
Many transport processes in nature take place on substrates, often considered as unidimensional lanes. These unidimensional substrates are typically non-static: affected by a fluct…