16 citations · 66 across the 23 of their papers we have counts for
4 papers · 1 filter
Efficient Construction of a Complete Index for Pan-Genomics Read Alignment
Alan Kuhnle, Taher Mun, Christina Boucher +3
While short read aligners, which predominantly use the FM-index, are able to easily index one or a few human genomes, they do not scale well to indexing databases containing thousa…
Fast Maximization of Non-Submodular, Monotonic Functions on the Integer Lattice
Alan Kuhnle, J. David Smith, Victoria G. Crawford +1
The optimization of submodular functions on the integer lattice has received much attention recently, but the objective functions of many applications are non-submodular. We provid…
Prefix-Free Parsing for Building Big BWTs
Christina Boucher, Travis Gagie, Alan Kuhnle +3
High-throughput sequencing technologies have led to explosive growth of genomic databases; one of which will soon reach hundreds of terabytes. For many applications we want to buil…
Multiplex Influence Maximization in Online Social Networks with Heterogeneous Diffusion Models
Alan Kuhnle, Md Abdul Alim, Xiang Li +2
Motivated by online social networks that are linked together through overlapping users, we study the influence maximization problem on a multiplex, with each layer endowed with its…