activity
20002015
most citedEvaluation of tools for differential gene expression analysis by RNA-seq on a 48 biological replicate experiment

1.1k citations · 2.6k across the 24 of their papers we have counts for

collaborators

23 papers

q-bio.GN2015★ 1.1k cited

Evaluation of tools for differential gene expression analysis by RNA-seq on a 48 biological replicate experiment

Nicholas J. Schurch, Pieta Schofield, Marek Gierliński +9

An RNA-seq experiment with 48 biological replicates in each of 2 conditions was performed to determine the number of biological replicates () required, and to identify the mos…

q-bio.GN2015★ 96 cited

Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment

Marek Gierliński, Christian Cole, Pietà Schofield +9

High-throughput RNA sequencing (RNA-seq) is now the standard method to determine differential gene expression. Identifying differentially expressed genes crucially depends on estim…

q-bio.GN2013★ 35 cited

Improved annotation of 3-prime untranslated regions and complex loci by combination of strand-specific Direct RNA Sequencing, RNA-seq and ESTs

Nick Schurch, Christian Cole, Alexander Sherstnev +7

The reference annotations made for a genome sequence provide the framework for all subsequent analyses of the genome. Correct annotation is particularly important when interpreting…

astro-ph2008★ 32 cited

The location and kinematics of the coronal-line emitting regions in AGN

J. R. Mullaney, M. J. Ward, C. Done +2

We use the photoionisation code Cloudy to determine both the location and the kinematics of the optical forbidden, high ionisation line (hereafter, FHIL) emitting gas in the narrow…

astro-ph2008★ 76 cited

The impact of accretion disk winds on the X-ray spectrum of AGN: Part 2 - XSCORT + Hydrodynamic Simulations

N. J. Schurch, C. Done, D. Proga

abridged: We use XSCORT, together with the hydrodynamic accretion disc wind simulation from Proga & Kallman (2004), to calculate the impact that the accretion disk wind has on the…

astro-ph2008★ 3 cited

Integral and Rxte/Asm Observations on Igr J17098-3628

Yu-Peng Chen, Shu Zhang, Nick Schurch +5

To probe further the possible nature of the unidentified source IGR J17098-3628, we have carried out a detailed analysis of its long-term time variability as monitored by RXTE/ASM,…