3 papers
cs.AI2026
TIGER: Text-Informed Generalized Enzyme-Reaction Retrieval
Yuhang Zhang, Keyan Ding, Peilin Chen +5
Enzyme-reaction retrieval is a fundamental problem in computational biology, underpinning enzyme characterization, reaction mechanism elucidation, and the rational design of metabo…
q-bio.GN2026
Genome-Factory: A Library for Tuning, Deploying, and Interpreting Genomic Foundation Models
Weimin Wu, Xuefeng Song, Yibo Wen +5
We introduce Genome-Factory, the first integrated Python library for tuning, deploying, and interpreting genomic foundation models. Our core contribution is to simplify and unify t…
cs.CE2026
Cell-JEPA: Latent Representation Learning for Single-Cell Transcriptomics
Ali ElSheikh, Rui-Xi Wang, Weimin Wu +9
Single-cell foundation models learn by reconstructing masked gene expression, implicitly treating technical noise as signal. With dropout rates exceeding 90%, reconstruction object…