30 citations · 52 across the 2 of their papers we have counts for
2 papers
q-bio.BM2008★ 30 cited
Hydrodynamic Interactions in Protein Folding
Marek Cieplak, Szymon Niewieczerzał
We incorporate hydrodynamic interactions (HI) in a coarse-grained and structure-based model of proteins by employing the Rotne-Prager hydrodynamic tensor. We study several small pr…
q-bio.BM2008★ 22 cited
Stretching and twisting of the DNA duplexes in coarse grained dynamical models
Szymon Niewieczerzał, Marek Cieplak
Three coarse-grained models of the double-stranded DNA are proposed and compared in the context of mechanical manipulation such as twisting and various schemes of stretching. The m…