232 citations · 1.1k across the 31 of their papers we have counts for
31 papers
Modelling Protein Target-Search in Human Chromosomes
Markus Nyberg, Tobias Ambjörnsson, Per Stenberg +1
Several processes in the cell, such as gene regulation, start when key proteins recognise and bind to short DNA sequences. However, as these sequences can be hundreds of million ti…
Stochastic unfolding of nanoconfined DNA: experiments, model and Bayesian analysis
Jens Krog, Mohammadreza Alizadehheidari, Erik Werner +6
Nanochannels provide means for detailed experiments on the effect of confinement on biomacromolecules, such as DNA. We here introduce a model for the complete unfolding of DNA from…
Fitting a function to time-dependent ensemble averaged data
Karl Fogelmark, Michael A. Lomholt, Anders Irback +1
Time-dependent ensemble averages, i.e., trajectory-based averages of some observable, are of importance in many fields of science. A crucial objective when interpreting such data i…
Zero-Crossing Statistics for Non-Markovian Time Series
Markus Nyberg, Ludvig Lizana, Tobias Ambjörnsson
In applications spaning from image analysis and speech recognition, to energy dissipation in turbulence and time-to failure of fatigued materials, researchers and engineers want to…
Tracer Particles in Two-Dimensional Elastic Networks Diffuse Logarithmically Slow
Ludvig Lizana, Tobias Ambjörnsson, Michael A. Lomholt
Several experiments on tagged molecules or particles in living systems suggest that they move anomalously slow - their mean squared displacement (MSD) increase slower than linearly…
Nanoconfined circular and linear DNA - equilibrium conformations and unfolding kinetics
M. Alizadehheidari, E. Werner, C. Noble +8
Studies of circular DNA confined to nanofluidic channels are relevant both from a fundamental polymer-physics perspective and due to the importance of circular DNA molecules in viv…