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BEAGLE in Action: Phylogenetic Likelihoods for Very Large State Spaces
Benjamin D Redelings, April Wright, Karthik Gangavarapu +9
Computing phylogenetic likelihoods becomes challenging when the continuous-time Markov chain has a large state space. At each branch, pruning algorithms require terms of the form $…
q-bio.PE2026★ 1 cited
BEAGLE 4.1: A high-performance library for computation on phylogenetic trees across diverse parallel architectures
Karthik Gangavarapu, Xiang Ji, Yucai Shao +4
Efficient evaluation of sequence data likelihoods and their high-dimensional gradients on phylogenetic trees improves inference under both maximum-likelihood and Bayesian framework…