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stat.CO2026
BEAGLE in Action: Phylogenetic Likelihoods for Very Large State Spaces
Benjamin D Redelings, April Wright, Karthik Gangavarapu +9
Computing phylogenetic likelihoods becomes challenging when the continuous-time Markov chain has a large state space. At each branch, pruning algorithms require terms of the form $…
stat.CO2023
Many-core algorithms for high-dimensional gradients on phylogenetic trees
Karthik Gangavarapu, Xiang Ji, Guy Baele +4
The rapid growth in genomic pathogen data spurs the need for efficient inference techniques, such as Hamiltonian Monte Carlo (HMC) in a Bayesian framework, to estimate parameters o…