2 papers
cs.DC2026
Endeavor: Efficient PairHMM for Detection of DNA Variants in Genome-Scale Datasets
Miguel Graça, Aleksandar Ilic
DNA variant calling represents a key operation in bioinformatics pipelines that aims at identifying genetic variants. Given an evidenced explosion in genomic data availability, the…
cs.DC2026
TrioSeq: A Novel Approach to Accelerate Triplet Sequence Alignment on GPUs
Miguel Graça, Aleksandar Ilic
State-of-the-art multiple sequence alignment (MSA) algorithms are based on progressive approaches that rely on pairwise sequence alignment (PSA) to generate guide trees to align al…