16 citations · 31 across the 6 of their papers we have counts for
6 papers
Long range correlations and folding angle in polymers with applications to α-helical proteins
Andrey Krokhotin, Stam Nicolis, Antti J. Niemi
The conformational complexity of linear polymers far exceeds that of point-like atoms and molecules. Polymers can bend, twist, even become knotted. Thus they may also display a muc…
On the role of thermal backbone fluctuations in myoglobin ligand gate dynamics
Andrey Krokhotin, Antti J. Niemi, Xubiao Peng
We construct an energy function that describes the crystallographic structure of spermwhale myoglobin backbone. As a model in our construction, we use the Protein Data Bank entry 1…
Solitons and Collapse in the lambda-repressor protein
Andrey Krokhotin, Martin Lundgren, Antti J. Niemi
The enterobacteria lambda phage is a paradigm temperate bacteriophage. Its lysogenic and lytic life cycles echo competition between the DNA binding -repressor (CI) and CRO prote…
Soliton driven relaxation dynamics and universality in protein collapse
Andrey Krokhotin, Martin Lundgren, Antti J. Niemi
Protein collapse can be viewed as a dynamical phase transition, during which new scales and collective variables become excited while the old ones recede and fade away. This causes…
The protein dynamical transition is a pseudogap changeover
Andrey Krokhotin, Antti J. Niemi
The emergence of biochemical activities in a protein seem to commence with the onset of atomic mean-square displacements along the protein lattice. The ensuing protein dynamical tr…
Asymptotic effects in jet production at high energies
V. B. Gavrilov, V. T. Kim, A. A. Krokhotin +2
Monte Carlo event simulation with BFKL evolution is discussed. We report current status of a Monte Carlo event generator ULYSSES with BFKL evolution implemented. The ULYSSES, based…