1.6k citations · 2.4k across the 5 of their papers we have counts for
5 papers
TraitLab: a Matlab package for fitting and simulating binary tree-like data
Luke J. Kelly, Geoff K. Nicholls, Robin J. Ryder +1
TraitLab is a software package for simulating, fitting and analysing tree-like binary data under a stochastic Dollo model of evolution. The model also allows for rate heterogeneity…
PEACH Tree: A Multiple Sequence Alignment and Tree Display Tool for Epidemiologists
Jordan Douglas, David Welch
PEACH Tree is an easy-to-use, online tool for displaying multiple sequence alignments and phylogenetic trees side-by-side. PEACH Tree is powerful for rapidly tracing evolutionary a…
Bayesian total evidence dating reveals the recent crown radiation of penguins
Alexandra Gavryushkina, Tracy A. Heath, Daniel T. Ksepka +3
The total-evidence approach to divergence-time dating uses molecular and morphological data from extant and fossil species to infer phylogenetic relationships, species divergence t…
Bayesian inference of sampled ancestor trees for epidemiology and fossil calibration
Alexandra Gavryushkina, David Welch, Tanja Stadler +1
Phylogenetic analyses which include fossils or molecular sequences that are sampled through time require models that allow one sample to be a direct ancestor of another sample. As…
Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems
Tina Toni, David Welch, Natalja Strelkowa +2
Approximate Bayesian computation methods can be used to evaluate posterior distributions without having to calculate likelihoods. In this paper we discuss and apply an approximate…