3 papers
cs.DB2026
Automated Standardization of Legacy Biomedical Metadata Using an Ontology-Constrained LLM Agent
Josef Hardi, Martin J. O'Connor, Marcos Martinez-Romero +3
Descriptive scientific metadata in public repositories are often incomplete and inconsistent with community standards and ontologies, limiting data FAIRness. Large language models…
q-bio.QM2025
HuBMAP Data Portal: a resource for multimodal spatial and single-cell data of healthy human tissues
Morgan L. Turner, Thomas C. Smits, Tiffany S. Liaw +46
The NIH Human BioMolecular Atlas Program (HuBMAP) Data Portal (https://portal.hubmapconsortium.org/) serves as a comprehensive repository for multimodal, multi-scale spatial and si…
cs.DL2024
Ensuring Adherence to Standards in Experiment-Related Metadata Entered Via Spreadsheets
Martin J. O'Connor, Josef Hardi, Marcos Martínez-Romero +5
Scientists increasingly recognize the importance of providing rich, standards-adherent metadata to describe their experimental results. Despite the availability of sophisticated to…