127 citations · 153 across the 4 of their papers we have counts for
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q-bio.QM2015
Pseudoalignment for metagenomic read assignment
Lorian Schaeffer, Harold Pimentel, Nicolas Bray +2
We explore connections between metagenomic read assignment and the quantification of transcripts from RNA-Seq data. In particular, we show that the recent idea of pseudoalignment i…
q-bio.QM2015★ 127 cited
Near-optimal RNA-Seq quantification
Nicolas Bray, Harold Pimentel, Páll Melsted +1
We present a novel approach to RNA-Seq quantification that is near optimal in speed and accuracy. Software implementing the approach, called kallisto, can be used to analyze 30 mil…