17 citations · 37 across the 11 of their papers we have counts for
7 papers · 1 filter
Selection of Distinct Morphologies to Divide & Conquer Gigapixel Pathology Images
Abubakr Shafique, Saghir Alfasly, Areej Alsaafin +3
Whole slide images (WSIs) are massive digital pathology files illustrating intricate tissue structures. Selecting a small, representative subset of patches from each WSI is essenti…
Rotation-Agnostic Image Representation Learning for Digital Pathology
Saghir Alfasly, Abubakr Shafique, Peyman Nejat +4
This paper addresses complex challenges in histopathological image analysis through three key contributions. Firstly, it introduces a fast patch selection method, FPS, for whole-sl…
When is a Foundation Model a Foundation Model
Saghir Alfasly, Peyman Nejat, Sobhan Hemati +13
Recently, several studies have reported on the fine-tuning of foundation models for image-text modeling in the field of medicine, utilizing images from online data sources such as…
A Preliminary Investigation into Search and Matching for Tumour Discrimination in WHO Breast Taxonomy Using Deep Networks
Abubakr Shafique, Ricardo Gonzalez, Liron Pantanowitz +4
Breast cancer is one of the most common cancers affecting women worldwide. They include a group of malignant neoplasms with a variety of biological, clinical, and histopathological…
Immunohistochemistry Biomarkers-Guided Image Search for Histopathology
Abubakr Shafique, Morteza Babaie, Ricardo Gonzalez +1
Medical practitioners use a number of diagnostic tests to make a reliable diagnosis. Traditionally, Haematoxylin and Eosin (H&E) stained glass slides have been used for cancer diag…
Composite Biomarker Image for Advanced Visualization in Histopathology
Abubakr Shafique, Morteza Babaie, Ricardo Gonzalez +3
Immunohistochemistry (IHC) biomarkers are essential tools for reliable cancer diagnosis and subtyping. It requires cross-staining comparison among Whole Slide Images (WSIs) of IHCs…
Comments on 'Fast and scalable search of whole-slide images via self-supervised deep learning'
Milad Sikaroudi, Mehdi Afshari, Abubakr Shafique +2
Chen et al. [Chen2022] recently published the article 'Fast and scalable search of whole-slide images via self-supervised deep learning' in Nature Biomedical Engineering. The autho…