3 papers
q-bio.BM2026
Atom-level Protein Representation Learning Improves Protein Structure Prediction
Taewon Kim, Hyosoon Jang, Hyunjin Seo +6
Recent advances in generative modeling show that pretrained representations can improve generation as conditioning features or alignment targets. Motivated by this, we study protei…
cs.LG2024
Discrete Diffusion Schrödinger Bridge Matching for Graph Transformation
Jun Hyeong Kim, Seonghwan Kim, Seokhyun Moon +3
Transporting between arbitrary distributions is a fundamental goal in generative modeling. Recently proposed diffusion bridge models provide a potential solution, but they rely on…
q-bio.BM2024
DeepBioisostere: Discovering Bioisosteres with Deep Learning for a Fine Control of Multiple Molecular Properties
Hyeongwoo Kim, Seokhyun Moon, Wonho Zhung +3
Optimizing molecular properties while preserving biological activity is a central challenge in drug design. Bioisosteric replacement, which substitutes a molecular fragment with a…