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20212026
most citedScientific Large Language Models: A Survey on Biological & Chemical Domains

34 citations · 57 across the 8 of their papers we have counts for

collaborators

8 papers

cs.AI2026

When Teachers Mislead: Spurious-Signal-Aware On-Policy Distillation

Yinuo Jiang, Yongjie Ye, Zhou Tao +4

On-Policy distillation (OPD) transfers teacher capabilities by supervising student-sampled trajectories with dense token-level teacher signals. Recent selective OPD methods improve…

cs.CL2024★ 7 cited

Advancing biomolecular understanding and design following human instructions

Xiang Zhuang, Keyan Ding, Tianwen Lyu +9

Understanding and designing biomolecules, such as proteins and small molecules, is central to advancing drug discovery, synthetic biology and enzyme engineering. Recent breakthroug…

cs.CL2024

StableMask: Refining Causal Masking in Decoder-only Transformer

Qingyu Yin, Xuzheng He, Xiang Zhuang +4

The decoder-only Transformer architecture with causal masking and relative position encoding (RPE) has become the de facto choice in language modeling. Despite its exceptional perf…

cs.CL2024★ 34 cited

Scientific Large Language Models: A Survey on Biological & Chemical Domains

Qiang Zhang, Keyang Ding, Tianwen Lyv +22

Large Language Models (LLMs) have emerged as a transformative power in enhancing natural language comprehension, representing a significant stride toward artificial general intelli…

cs.LG2023★ 5 cited

Learning Invariant Molecular Representation in Latent Discrete Space

Xiang Zhuang, Qiang Zhang, Keyan Ding +5

Molecular representation learning lays the foundation for drug discovery. However, existing methods suffer from poor out-of-distribution (OOD) generalization, particularly when dat…

q-bio.BM2023★ 8 cited

InstructProtein: Aligning Human and Protein Language via Knowledge Instruction

Zeyuan Wang, Qiang Zhang, Keyan Ding +4

Large Language Models (LLMs) have revolutionized the field of natural language processing, but they fall short in comprehending biological sequences such as proteins. To address th…

cs.LG2021★ 2 cited

Molecular Contrastive Learning with Chemical Element Knowledge Graph

Yin Fang, Qiang Zhang, Haihong Yang +7

Molecular representation learning contributes to multiple downstream tasks such as molecular property prediction and drug design. To properly represent molecules, graph contrastive…

cs.AI2021★ 1 cited

Benchmarking Knowledge-driven Zero-shot Learning

Yuxia Geng, Jiaoyan Chen, Xiang Zhuang +5

External knowledge (a.k.a. side information) plays a critical role in zero-shot learning (ZSL) which aims to predict with unseen classes that have never appeared in training data.…