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cs.LG2026
ProteinJEPA: Latent prediction complements protein language models
Dan Ofer, Dafna Shahaf, Michal Linial
Protein language models are trained primarily with masked language modeling (MLM), which predicts amino-acid identities at masked positions. We ask whether latent-space prediction…
cs.LG2026
ProtSent: Protein Sentence Transformers
Dan Ofer, Oriel Perets, Michal Linial +1
Protein language models (pLMs) produce per-residue representations that capture evolutionary and structural information, yet their mean-pooled sequence embeddings are not explicitl…