6 citations · 6 across the 2 of their papers we have counts for
3 papers
ProtSCAPE: Mapping the landscape of protein conformations in molecular dynamics
Siddharth Viswanath, Dhananjay Bhaskar, David R. Johnson +7
Understanding the dynamic nature of protein structures is essential for comprehending their biological functions. While significant progress has been made in predicting static fold…
ReLSO: A Transformer-based Model for Latent Space Optimization and Generation of Proteins
Egbert Castro, Abhinav Godavarthi, Julian Rubinfien +3
The development of powerful natural language models have increased the ability to learn meaningful representations of protein sequences. In addition, advances in high-throughput mu…
Uncovering the Folding Landscape of RNA Secondary Structure with Deep Graph Embeddings
Egbert Castro, Andrew Benz, Alexander Tong +2
Biomolecular graph analysis has recently gained much attention in the emerging field of geometric deep learning. Here we focus on organizing biomolecular graphs in ways that expose…