activity
20122026
most citedmCLM: A Modular Chemical Language Model that Generates Functional and Makeable Molecules

1 citations · 2 across the 4 of their papers we have counts for

collaborators

6 papers

physics.chem-ph2026

Hypothesis-and-Refinement Learning of Organic Structures from Multimodal Spectroscopic Data

Chengchun Liu, Zhiyuan Yan, Li Yuan +5

Determining molecular structures from spectroscopic data remains fundamentally challenging because the inverse problem is intrinsically underdetermined: individual spectra are spar…

cs.AI2025★ 1 cited

mCLM: A Modular Chemical Language Model that Generates Functional and Makeable Molecules

Carl Edwards, Chi Han, Gawon Lee +11

Despite their ability to understand chemical knowledge, large language models (LLMs) remain limited in their capacity to propose novel molecules with desired functions (e.g., drug-…

q-bio.BM2024

Statistical Survey of Chemical and Geometric Patterns on Protein Surfaces as a Blueprint for Protein-mimicking Nanoparticles

John M. McBride, Aleksei Koshevarnikov, Marta Siek +2

Despite recent breakthroughs in understanding how protein sequence relates to structure and function, considerably less attention has been paid to the general features of protein s…

q-bio.BM2022★ 1 cited

AlphaFold2 can predict single-mutation effects

John M. McBride, Konstantin Polev, Amirbek Abdirasulov +3

AlphaFold2 (AF) is a promising tool, but is it accurate enough to predict single mutation effects? Here, we report that the localized structural deformation between protein pairs d…

cond-mat.soft2013

Microphase separation as the cause of structural complexity in 2D liquids

Alexander Z. Patashinski, Mark A. Ratner, Bartosz A. Grzybowski +2

Complex behavior in glassforming liquids is associated with formation of a mosaic of different structures. Using bond order parameters together with topological characteristics of…

cond-mat.dis-nn2012

What makes a complex liquid complex?

Alexander Z. Patashinski, Rafal Orlik, Antoni C. Mitus +2

We view a complex liquid as a network of bonds connecting each particle to its nearest neighbors; the dynamics of this network is a chain of discrete events signaling particles rea…