5 papers
Fitness Inference in Presence of Migrations between Coupled Evolving Populations
Yu-Han Huang, Bastien Dumont, Hong-Li Zeng +2
The phase of Quasi-Linkage Equilibrium (QLE) in evolutionary populations is analogous to the thermal equilibrium state in statistical mechanics, a concept pioneered by Kimura in 19…
Classification of SARS-CoV-2 Variants through The Epistatical Circos Plots with Convolutional Neural Networks
Bo Jing, Kai-Rui Zhang, Hong-Li Zeng +1
The COVID-19 pandemic has profoundly affected global health, driven by the remarkable transmissibility and mutational adaptability of the SARS-CoV-2 virus. Although five variants o…
Fitness inference tested by in silico population genetics
Hong-Li Zeng, Yu-Han Huang, John Barton +1
We consider populations evolving according to natural selection, mutation, and recombination, and assume that the genomes of all or a representative selection of individuals are kn…
Average entanglement entropy of a small subsystem in a constrained pure Gaussian state ensemble
Erik Aurell, Lucas Hackl, Mario Kieburg
We consider ensembles of pure Gaussian states parametrized by single-mode marginals and (optionally) specific mode-mode correlations. Such ensembles provide a model for the final s…
The curious case of operators with spectral density increasing as
Erik Aurell, Satya N. Majumdar
Motivated by a putative model of black holes as quantum objects we consider what types of operators would have a corresponding spectrum. We find that there are indeed such operator…