18 citations · 53 across the 15 of their papers we have counts for
16 papers
Forming native shortcut networks to simulate protein folding
Susan Khor
Native shortcut networks (SCN0) are sub-graphs of native protein residue networks (PRN0). In this paper, we propose the Network Dynamics (ND) model, which reconstructs a PRN0 by ad…
Folding with a protein's native shortcut network
Susan Khor
A complex network approach to protein folding is proposed. The graph object is the network of shortcut edges present in a native-state protein (SCN0). Although SCN0s are found via…
The short-cut network within protein residue networks
Susan Khor
A protein residue network (PRN) is a network of interacting amino acids within a protein. We describe characteristics of a sparser, highly central and more volatile sub-network of…
Comparing local search paths with global search paths on protein residue networks: allosteric communication
Susan Khor
Although proteins have been recognized as small-world networks and their small-world network properties of clustering and short paths have been exploited computationally to produce…
Protein residue networks from a local search perspective
Susan Khor
We examined protein residue networks (PRNs) from a local search perspective to understand why PRNs are highly clustered when having short paths is important for protein functionali…
Piggy-backing protein domains with Formal Concept Analysis
Susan Khor
Identifying reliable domain-domain interactions (DDIs) will increase our ability to predict novel protein-protein interactions (PPIs), to unravel interactions in protein complexes,…