32 citations · 59 across the 7 of their papers we have counts for
7 papers
Selective Clustering Annotated using Modes of Projections
Evan Greene, Greg Finak, Raphael Gottardo
Selective clustering annotated using modes of projections (SCAMP) is a new clustering algorithm for data in . SCAMP is motivated from the point of view of non-paramet…
Sequential Dirichlet Process Mixtures of Multivariate Skew t-distributions for Model-based Clustering of Flow Cytometry Data
Boris P. Hejblum, Chariff Alkhassim, Raphael Gottardo +2
Flow cytometry is a high-throughput technology used to quantify multiple surface and intracellular markers at the level of a single cell. This enables to identify cell sub-types, a…
Graphical Models for Zero-Inflated Single Cell Gene Expression
Andrew McDavid, Raphael Gottardo, Noah Simon +1
Bulk gene expression experiments relied on aggregations of thousands of cells to measure the average expression in an organism. Advances in microfluidic and droplet sequencing now…
Data Exploration, Quality Control and Testing in Single-Cell qPCR-Based Gene Expression Experiments
Andrew McDavid, Greg Finak, Pratip K. Chattopadyay +5
Cell populations are never truly homogeneous; individual cells exist in biochemical states that define functional differences between them. New technology based on microfluidic arr…
Mixture Models for Single Cell Assays with Applications to Vaccine Studies
Greg Finak, Andrew McDavid, Pratip Chattopadhyay +4
In immunological studies, the characterization of small, functionally distinct cell subsets from blood and tissue is crucial to decipher system level biological changes. An increas…
Grouping Priors and the Bayesian Elastic Net
Luke Bornn, Raphael Gottardo, Arnaud Doucet
In the literature surrounding Bayesian penalized regression, the two primary choices of prior distribution on the regression coefficients are zero-mean Gaussian and Laplace. While…