3 papers
q-bio.QM2026
Interpreting Latent Protein Language Model Features with Geometric Annotations
Siddharth Setlur, Djordje Mihajlovic, Darrick Lee
Protein language models (pLMs) encode information about protein sequences which enable downstream tasks such as structure prediction, but their internal representations are not wel…
math.GT2026
Writhe-Based Polymer Link Classification Using Machine Learning
Jack Beda, Djordje Mihajlovic, Kasturi Barkataki +1
Unique and rapid classification of knots and links is an open mathematical problem that is relevant to a range of (bio)physical systems, including polymer melts, DNA, and proteins.…
cs.LG2026
Shortcut learning in geometric knot classification
Djordje Mihajlovic, Davide Michieletto
Classifying the topology of closed curves is a central problem in low dimensional topology with applications beyond mathematics spanning protein folding, polymer physics and even m…