473 citations · 636 across the 5 of their papers we have counts for
5 papers
Serverification of Molecular Modeling Applications: the Rosetta Online Server that Includes Everyone (ROSIE)
Sergey Lyskov, Fang-Chieh Chou, Shane Ó Conchúir +14
The Rosetta molecular modeling software package provides experimentally tested and rapidly evolving tools for the 3D structure prediction and high-resolution design of proteins, nu…
Correcting pervasive errors in RNA crystallography through enumerative structure prediction
Fang-Chieh Chou, Parin Sripakdeevong, Sergey M. Dibrov +2
Three-dimensional RNA models fitted into crystallographic density maps exhibit pervasive conformational ambiguities, geometric errors and steric clashes. To address these problems,…
Can biopolymer structures be sampled enumeratively? Atomic-accuracy RNA loop modeling by a stepwise ansatz
Parin Sripakdeevong, Wipapat Kladwang, Rhiju Das
Atomic-accuracy structure prediction of macromolecules is a long-sought goal of computational biophysics. Accurate modeling should be achievable by optimizing a physically realisti…
Why Can't We Predict RNA Structure At Atomic Resolution?
Kyle Beauchamp, Parin Sripakdeevong, Rhiju Das
No existing algorithm can start with arbitrary RNA sequences and return the precise, three-dimensional structures that ensures their biological function. This chapter outlines curr…
Parameter scaling in a novel measure of quantum-classical difference for decohering chaotic systems
Nathan Wiebe, Parin Sripakdeevong, Arnaldo Gammal +1
In this paper we introduce a diagnostic for measuring the quantum-classical difference for open quantum systems, which is the normalized size of the quantum terms in the Master equ…