100 citations · 218 across the 7 of their papers we have counts for
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Variational embedding of protein folding simulations using gaussian mixture variational autoencoders
Mahdi Ghorbani, Samarjeet Prasad, Jeffery B. Klauda +1
Conformational sampling of biomolecules using molecular dynamics simulations often produces large amount of high dimensional data that makes it difficult to interpret using convent…
How accurate are polymer models in the analysis of Forster resonance energy transfer experiments on proteins?
E. P. O'Brien, G. Morrison, B. R. Brooks +1
Single molecule Forster resonance energy transfer (FRET) experiments are used to infer the properties of the denatured state ensemble (DSE) of proteins. From the measured average F…
Molecular origin of constant m-values, denatured state collapse, and residue-dependent transition midpoints in globular proteins
Edward P. O'Brien, Bernard R. Brooks, Dave Thirumalai
Experiments show that for many two state folders the free energy of the native state DG_ND([C]) changes linearly as the denaturant concentration [C] is varied. The slope, m = d DG_…