690 citations · 1.5k across the 11 of their papers we have counts for
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q-bio.GN2016
Efficient Index Maintenance Under Dynamic Genome Modification
Nitish Gupta, Komal Sanjeev, Tim Wall +2
Efficient text indexing data structures have enabled large-scale genomic sequence analysis and are used to help solve problems ranging from assembly to read mapping. However, these…
q-bio.GN2013★ 666 cited
Sailfish: Alignment-free Isoform Quantification from RNA-seq Reads using Lightweight Algorithms
Rob Patro, Stephen M. Mount, Carl Kingsford
RNA-seq has rapidly become the de facto technique to measure gene expression. However, the time required for analysis has not kept up with the pace of data generation. Here we intr…