activity
20232026
most citedIgPose: A Generative Data-Augmented Pipeline for Robust Immunoglobulin-Antigen Binding Prediction

1 citations · 1 across the 7 of their papers we have counts for

collaborators

8 papers

math.NA2026

Wasserstein Bounds for Ambient and Latent Smoothing on Data Manifolds

Wonjun Lee, Wenyan Luo

Smoothing empirical data can fill gaps between observations, while noise in the surrounding space can move mass away from the manifold supporting the data. We derive Wasserstein er…

cs.LG2026

Understanding Latent Diffusability via Fisher Geometry

Jing Gu, Morteza Mardani, Wonjun Lee +2

Diffusion models often degrade in latent spaces, yet the formal causes remain poorly understood. We quantify latent-space diffusability via the rate of change of the Minimum Mean S…

cs.LG2026★ 1 cited

IgPose: A Generative Data-Augmented Pipeline for Robust Immunoglobulin-Antigen Binding Prediction

Tien-Cuong Bui, Injae Chung, Wonjun Lee +2

Predicting immunoglobulin-antigen (Ig-Ag) binding remains a significant challenge due to the paucity of experimentally-resolved complexes and the limited accuracy of de novo Ig str…

math.NA2025

Dynamics Over Landscape: The Emergence of Linear Separability via Spectral Alignment in Contrastive Learning

Jeff Calder, Wonjun Lee

Contrastive learning effectively clusters data despite a loss landscape filled with poor solutions, a success that is heavily dependent on the choice of data augmentations. How opt…

math.NA2025

Geometry-Preserving Encoder/Decoder in Latent Generative Models

Wonjun Lee, Riley C. W. O'Neill, Dongmian Zou +2

Generative modeling aims to generate new data samples that resemble a given dataset. When using diffusion models for this task, one of the main challenges is solving the problem in…

cs.LG2024

Improving Hyperbolic Representations via Gromov-Wasserstein Regularization

Yifei Yang, Wonjun Lee, Dongmian Zou +1

Hyperbolic representations have shown remarkable efficacy in modeling inherent hierarchies and complexities within data structures. Hyperbolic neural networks have been commonly ap…

math.NA2023

Monotone discretizations of levelset convex geometric PDEs

Jeff Calder, Wonjun Lee

We introduce a novel algorithm that converges to level-set convex viscosity solutions of high-dimensional Hamilton-Jacobi equations. The algorithm is applicable to a broad class of…

cs.LG2023

Monotone Generative Modeling via a Gromov-Monge Embedding

Wonjun Lee, Yifei Yang, Dongmian Zou +1

Generative adversarial networks (GANs) are popular for generative tasks; however, they often require careful architecture selection, extensive empirical tuning, and are prone to mo…