25 citations · 33 across the 4 of their papers we have counts for
4 papers
Whole slide and microscopy image analysis with QuPath and OMERO
Léo Leplat, Alan O'Callaghan, Peter Bankhead
QuPath is open-source software for bioimage analysis. As a desktop application that is flexible and easy to install, QuPath is used by labs worldwide to visualise and analyse large…
InstanSeg: an embedding-based instance segmentation algorithm optimized for accurate, efficient and portable cell segmentation
Thibaut Goldsborough, Ben Philps, Alan O'Callaghan +5
Cell and nucleus segmentation are fundamental tasks for quantitative bioimage analysis. Despite progress in recent years, biologists and other domain experts still require novel al…
MIFA: Metadata, Incentives, Formats, and Accessibility guidelines to improve the reuse of AI datasets for bioimage analysis
Teresa Zulueta-Coarasa, Florian Jug, Aastha Mathur +24
Artificial Intelligence methods are powerful tools for biological image analysis and processing. High-quality annotated images are key to training and developing new methods, but a…
Open and reusable deep learning for pathology with WSInfer and QuPath
Jakub R. Kaczmarzyk, Alan O'Callaghan, Fiona Inglis +5
The field of digital pathology has seen a proliferation of deep learning models in recent years. Despite substantial progress, it remains rare for other researchers and pathologist…