7 papers
PhyloFrame: A DataFrame-based Library for Fast, Flexible Phylogenetic Computation
Matthew Andres Moreno, Jeet Sukumaran, Luis Zaman +1
PhyloFrame is a Python library for phylogenetic computation targeting the gap between specialist, compiler-optimized operations and flexible, script-based workflows -- with emphasi…
SPOOF: Simple Pixel Operations for Out-of-Distribution Fooling
Ankit Gupta, Christoph Adami, Emily Dolson
Deep neural networks (DNNs) excel across image recognition tasks, yet continue to exhibit overconfidence on inputs that bear no resemblance to natural images. Revisiting the "fooli…
A Scalable Trie Building Algorithm for High-Throughput Phyloanalysis of Wafer-Scale Digital Evolution Experiments
Vivaan Singhvi, Joey Wagner, Emily Dolson +2
Agent-based simulation platforms play a key role in enabling fast-to-run evolution experiments that can be precisely controlled and observed in detail. Availability of high-resolut…
Extending a Phylogeny-based Method for Detecting Signatures of Multi-level Selection for Applications in Artificial Life
Matthew Andres Moreno, Sanaz Hasanzadeh Fard, Luis Zaman +1
Multilevel selection occurs when short-term individual-level reproductive interests conflict with longer-term group-level fitness effects. Detecting and quantifying this phenomenon…
Downstream: efficient cross-platform algorithms for fixed-capacity stream downsampling
Connor Yang, Joey Wagner, Emily Dolson +2
Due to ongoing accrual over long durations, a defining characteristic of real-world data streams is the requirement for rolling, often real-time, mechanisms to coarsen or summarize…
The Robustness of Structural Features in Species Interaction Networks
Sanaz Hasanzadeh Fard, Emily Dolson
Species interaction networks are a powerful tool for describing ecological communities; they typically contain nodes representing species, and edges representing interactions betwe…