3 citations · 3 across the 1 of their papers we have counts for
3 papers
cs.DC2026★ 3 cited
Rapid GPU-Based Pangenome Graph Layout
Jiajie Li, Jan-Niklas Schmelzle, Yixiao Du +6
Computational Pangenomics is an emerging field that studies genetic variation using a graph structure encompassing multiple genomes. Visualizing pangenome graphs is vital for under…
cs.LG2024
Memory makes computation universal, remember?
Erik Garrison
Recent breakthroughs in AI capability have been attributed to increasingly sophisticated architectures and alignment techniques, but a simpler principle may explain these advances:…
cs.DS2024
Popping Bubbles in Pangenome Graphs
Njagi Mwaniki, Erik Garrison, Nadia Pisanti
In this paper, we introduce flubbles, a new definition of "bubbles" corresponding to variants in a (pan)genome graph . We then show a characterization for flubbles in terms of e…