3 papers
cs.CL2026
Locally Confident, Globally Stuck: The Quality-Exploration Dilemma in Diffusion Language Models
Liancheng Fang, Aiwei Liu, Henry Peng Zou +7
Diffusion large language models (dLLMs) theoretically permit token decoding in arbitrary order, a flexibility that could enable richer exploration of reasoning paths than autoregre…
q-bio.GN2026
CellMaster: Collaborative Cell Type Annotation in Single-Cell Analysis
Zhen Wang, Yiming Gao, Jieyuan Liu +10
Single-cell RNA-seq (scRNA-seq) enables atlas-scale profiling of complex tissues, revealing rare lineages and transient states. Yet, assigning biologically valid cell identities re…
cs.AI2026
scPilot: Large Language Model Reasoning Toward Automated Single-Cell Analysis and Discovery
Yiming Gao, Zhen Wang, Jefferson Chen +8
We present scPilot, the first systematic framework to practice omics-native reasoning: a large language model (LLM) converses in natural language while directly inspecting single-c…