3 citations · 4 across the 5 of their papers we have counts for
5 papers
Hate Speech Detection in Turkish and Arabic: A Comprehensive Study
Somaiyeh Dehghan, Gökçe Uludoğan, Mehmet Umut Şen +3
Online hate speech has been linked to a global rise in violence against minorities, including incidents such as mass shootings, lynchings, and ethnic cleansing. Societies grappling…
PUFFIN: Protein Unit Discovery with Functional Supervision
Gökçe Uludoğan, Buse Giledereli, Elif Ozkirimli +1
Proteins carry out biological functions through the coordinated action of groups of residues organized into structural arrangements. These arrangements, which we refer to as protei…
STAR-GO: Improving Protein Function Prediction by Learning to Hierarchically Integrate Ontology-Informed Semantic Embeddings
Mehmet Efe Akça, Gökçe Uludoğan, Arzucan Özgür +1
Accurate prediction of protein function is essential for elucidating molecular mechanisms and advancing biological and therapeutic discovery. Yet experimental annotation lags far b…
Exploring Data-Driven Chemical SMILES Tokenization Approaches to Identify Key Protein-Ligand Binding Moieties
Asu Büşra Temizer, Gökçe Uludoğan, Rıza Özçelik +5
Machine learning models have found numerous successful applications in computational drug discovery. A large body of these models represents molecules as sequences since molecular…
Exploiting Pretrained Biochemical Language Models for Targeted Drug Design
Gökçe Uludoğan, Elif Ozkirimli, Kutlu O. Ulgen +2
Motivation: The development of novel compounds targeting proteins of interest is one of the most important tasks in the pharmaceutical industry. Deep generative models have been ap…