3 papers
q-bio.QM2026
Direct RNA sequence design under codon constraints using expressive tensor-based secondary structure models
Mark Fornace, Christina Wuyan Wang, Michael Lindsey
Nucleic acid sequence design via codon optimization is a fundamental task with applications across synthetic biology, mRNA therapeutics, and vaccine design. Given a target protein,…
physics.comp-ph2024
Fast and spectrally accurate construction of adaptive diagonal basis sets for electronic structure
Michael Lindsey, Sandeep Sharma
In this article, we combine the periodic sinc basis set with a curvilinear coordinate system for electronic structure calculations. This extension allows for variable resolution ac…
physics.chem-ph2023
Nested Gausslet Basis Sets
Steven R. White, Michael J. Lindsey
We introduce nested gausslet (NG) bases, an improvement on previous gausslet bases which can treat systems containing atoms with much larger atomic number. We also introduce pure G…