362 citations · 1.3k across the 13 of their papers we have counts for
14 papers
A method for calculating entropy production without knowing transition rates or dwell times
John W. Biddle
The entropy production rate is central to the study of non-equilibrium systems. This parameter is closely connected to violation of time-reversal symmetry, energy consumption, effi…
Thermodynamic bounds on ultrasensitivity in covalent switching
Jeremy A. Owen, Pranay Talla, John W. Biddle +1
Switch-like motifs are among the basic building blocks of biochemical networks. A common motif that can serve as an ultrasensitive switch consists of two enzymes acting antagonisti…
Reversal symmetries for cyclic paths away from thermodynamic equilibrium
John W. Biddle, Jeremy Gunawardena
If a system is at thermodynamic equilibrium, an observer cannot tell whether a film of it is being played forward or in reverse: any transition will occur with the same frequency i…
Two-structure thermodynamics for the TIP4P/2005 model of water covering supercooled and deeply stretched regions
John W. Biddle, Rakesh S. Singh, Evan M. Sparano +7
One of the most promising frameworks for understanding the anomalies of cold and supercooled water postulates the existence of two competing, interconvertible local structures. If…
An Equation of State For The TIP4P/2005 Model of Water Including Negative Pressures
John W. Biddle, Rakesh S. Singh, Miguel A. González +5
One of the most promising frameworks for understanding the anomalies of cold and especially supercooled water is that of two-structure thermodynamics, in which water is viewed as a…
Two-State Thermodynamics and the Possibility of a Liquid-Liquid Phase Transition in Supercooled TIP4P/2005 Water
Rakesh S. Singh, John W. Biddle, Pablo G. Debenedetti +1
Water shows intriguing thermodynamic and dynamic anomalies in the supercooled liquid state. One possible explanation of the origin of these anomalies lies in the existence of a met…