3 papers
nlin.CG2026
Agnosiophobia in a virtual agent: behavioral and dynamical architecture in Lenia
Jesse Cool, Benedikt Hartl, Michael Levin +1
All embodied agents are fundamentally patterns in physiological or other excitable media, blurring the distinction between objects and processes. Emergent patterns with complex beh…
cs.LG2025
On learning functions over biological sequence space: relating Gaussian process priors, regularization, and gauge fixing
Samantha Petti, Carlos MartÃ-Gómez, Justin B. Kinney +2
Mappings from biological sequences (DNA, RNA, protein) to quantitative measures of sequence functionality play an important role in contemporary biology. We are interested in the r…
q-bio.GN2025
Inferring genotype-phenotype maps using attention models
Krishna Rijal, Caroline M. Holmes, Samantha Petti +3
Predicting phenotype from genotype is a central challenge in genetics. Traditional approaches in quantitative genetics typically analyze this problem using methods based on linear…