3 papers
cs.LG2026
FEM-Bench: A Structured Scientific Reasoning Benchmark for Evaluating Code-Generating LLMs
Saeed Mohammadzadeh, Erfan Hamdi, Joel Shor +1
As LLMs advance their reasoning capabilities about the physical world, the absence of rigorous benchmarks for evaluating their ability to generate scientifically valid physical mod…
q-bio.QM2025
SarcGraph for High-Throughput Regional Analysis of Sarcomere Organization and Contractile Function in 2D Cardiac Muscle Bundles
Saeed Mohammadzadeh, Yao-Chang Tsan, Aaron Renberg +3
Timelapse images of human induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CMs) provide rich information on cell structure and contractile function. However, it is chall…
q-bio.QM2025
Quantifying HiPSC-CM Structural Organization at Scale with Deep Learning-Enhanced SarcGraph
Saeed Mohammadzadeh, Emma Lejeune
In cardiac cells, structural organization is an important indicator of cell maturity and healthy function. Healthy cardiomyocytes exhibit well-aligned morphology with densely packe…