37 citations · 126 across the 25 of their papers we have counts for
3 papers · 1 filter
The Binary Perfect Phylogeny with Persistent characters
Paola Bonizzoni, Chiara Braghin, Riccardo Dondi +1
The binary perfect phylogeny model is too restrictive to model biological events such as back mutations. In this paper we consider a natural generalization of the model that allows…
Reconstructing Isoform Graphs from RNA-Seq data
Stefano Beretta, Paola Bonizzoni, Gianluca Della Vedova +1
Next-generation sequencing (NGS) technologies allow new methodologies for alternative splicing (AS) analysis. Current computational methods for AS from NGS data are mainly focused…
Haplotype Inference on Pedigrees with Recombinations, Errors, and Missing Genotypes via SAT solvers
Yuri Pirola, Gianluca Della Vedova, Stefano Biffani +2
The Minimum-Recombinant Haplotype Configuration problem (MRHC) has been highly successful in providing a sound combinatorial formulation for the important problem of genotype phasi…