42 citations · 60 across the 6 of their papers we have counts for
6 papers
How network properties and epidemic parameters influence stochastic SIR dynamics on scale-free random networks
Sara Sottile, Ozan Kahramanoğulları, Mattia Sensi
With the premise that social interactions are described by power-law distributions, we study a SIR stochastic dynamic on a static scale-free random network generated via configurat…
On Quantitative Comparison of Chemical Reaction Network Models
Ozan Kahramanoğulları
Chemical reaction networks (CRNs) provide a convenient language for modelling a broad variety of biological systems. These models are commonly studied with respect to the time seri…
Interaction and Depth against Nondeterminism in Proof Search
Ozan Kahramanogullari
Deep inference is a proof theoretic methodology that generalizes the standard notion of inference of the sequent calculus, whereby inference rules become applicable at any depth in…
Flux Analysis in Process Models via Causality
Ozan Kahramanoğullari
We present an approach for flux analysis in process algebra models of biological systems. We perceive flux as the flow of resources in stochastic simulations. We resort to an estab…
An Intuitive Automated Modelling Interface for Systems Biology
Ozan Kahramanoğullari, Luca Cardelli, Emmanuelle Caron
We introduce a natural language interface for building stochastic pi calculus models of biological systems. In this language, complex constructs describing biochemical events are b…
Biophysical mechanism for Ras-nanocluster formation and signaling in plasma membrane
Thomas Gurry, Ozan Kahramanogullari, Robert G. Endres
Ras GTPases are lipid-anchored G proteins which play a fundamental role in cell signaling processes. Electron micrographs of immunogold-labeled Ras have shown that membrane-bound R…