3 citations · 3 across the 3 of their papers we have counts for
3 papers
Finding high posterior density phylogenies by systematically extending a directed acyclic graph
Chris Jennings-Shaffer, David H Rich, Matthew Macaulay +7
Bayesian phylogenetics typically estimates a posterior distribution, or aspects thereof, using Markov chain Monte Carlo methods. These methods integrate over tree space by applying…
Torchtree: flexible phylogenetic model development and inference using PyTorch
Mathieu Fourment, Matthew Macaulay, Christiaan J Swanepoel +3
Bayesian inference has predominantly relied on the Markov chain Monte Carlo (MCMC) algorithm for many years. However, MCMC is computationally laborious, especially for complex phyl…
Differentiable Phylogenetics via Hyperbolic Embeddings with Dodonaphy
Matthew Macaulay, Mathieu Fourment
Motivation: Navigating the high dimensional space of discrete trees for phylogenetics presents a challenging problem for tree optimisation. To address this, hyperbolic embeddings o…