3 papers
cs.PF2025
denet, A lightweight command-line tool for process monitoring in benchmarking and beyond
Ben Carrillo, Izaskun Mallona
Summary: denet is a lightweight process monitoring tool providing real-time resource profiling of running processes. It reports CPU, memory, disk I/O, network activity, and thread…
q-bio.QM2024
Harnessing the Potential of Spatial Statistics for Spatial Omics Data with pasta
Martin Emons, Samuel Gunz, Helena L. Crowell +3
Spatial omics assays allow for the molecular characterisation of cells in their spatial context. Notably, the two main technological streams, imaging-based and high-throughput sequ…
q-bio.OT2024
Building a continuous benchmarking ecosystem in bioinformatics
Izaskun Mallona, Charlotte Soneson, Ben Carrillo +5
Benchmarking, which involves collecting reference datasets and demonstrating method performances, is a requirement for the development of new computational tools, but also becomes…