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math.GT2024★ 1 cited
A Khovanov Laplacian and Khovanov Dirac for Knots and Links
Benjamin Jones, Guo-Wei Wei
Khovanov homology has been the subject of much study in knot theory and low dimensional topology since 2000. This work introduces a Khovanov Laplacian and a Khovanov Dirac to study…
q-bio.BM2024
Persistent Directed Flag Laplacian (PDFL)-Based Machine Learning for Protein-Ligand Binding Affinity Prediction
Mushal Zia, Benjamin Jones, Hongsong Feng +1
Directionality in molecular and biomolecular networks plays a significant role in the accurate represention of the complex, dynamic, and asymmetrical nature of interactions present…
q-bio.QM2024
Drug Resistance Predictions Based on a Directed Flag Transformer
Dong Chen, Gengzhuo Liu, Hongyan Du +6
The continuous evolution of the SARS-CoV-2 virus poses a significant challenge to global public health. Of particular concern is the potential resistance to the widely prescribed d…