5 papers
BRIDGE: Biological Evidence Refinement and Heterogeneous Dynamic Gating for Gene Regulatory Networks
Ziyang Dong, Shanwen Tan, Hengchuang Yin +5
Motivation: Gene regulatory network inference from single-cell RNA sequencing (scRNA-seq) data is important for uncovering cell-state-specific transcriptional programs. However, sc…
MolReFlect: Towards In-Context Fine-grained Alignments between Molecules and Texts
Jiatong Li, Yunqing Liu, Wei Liu +6
Molecule discovery is a pivotal research field, impacting everything from medicine to materials. Recently, Large Language Models (LLMs) have been widely adopted in molecular unders…
Lightweight Retrieval-Augmented Generation and Large Language Model-Based Modeling for Scalable Patient-Trial Matching
Xiaodi Li, Yang Xiao, Munhwan Lee +7
Patient-trial matching requires reasoning over long, heterogeneous electronic health records (EHRs) and complex eligibility criteria, posing significant challenges for scalability,…
ChemVLM: Exploring the Power of Multimodal Large Language Models in Chemistry Area
Junxian Li, Di Zhang, Xunzhi Wang +16
Large Language Models (LLMs) have achieved remarkable success and have been applied across various scientific fields, including chemistry. However, many chemical tasks require the…
Large Language Models are In-Context Molecule Learners
Jiatong Li, Wei Liu, Zhihao Ding +3
Large Language Models (LLMs) have demonstrated exceptional performance in biochemical tasks, especially the molecule caption translation task, which aims to bridge the gap between…