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Factorization Machine with Quadratic-Optimization Annealing for RNA Inverse Folding and Evaluation of Binary-Integer Encoding and Nucleotide Assignment
Shuta Kikuchi, Shu Tanaka
The RNA inverse folding problem aims to identify nucleotide sequences that preferentially adopt a given target secondary structure. While various heuristic and machine learning-bas…
cs.LG2026
Effectiveness of Binary Autoencoders for QUBO-Based Optimization Problems
Tetsuro Abe, Masashi Yamashita, Shu Tanaka
In black-box combinatorial optimization, objective evaluations are often expensive, so high quality solutions must be found under a limited budget. Factorization machine with quant…