2 papers
cs.LG2026
PerturbDiff: Functional Diffusion for Single-Cell Perturbation Modeling
Xinyu Yuan, Xixian Liu, Ya Shi Zhang +3
Building Virtual Cells that can accurately simulate cellular responses to perturbations is a long-standing goal in systems biology. A fundamental challenge is that high-throughput…
q-bio.QM2025
Protein Structure Tokenization: Benchmarking and New Recipe
Xinyu Yuan, Zichen Wang, Marcus Collins +1
Recent years have witnessed a surge in the development of protein structural tokenization methods, which chunk protein 3D structures into discrete or continuous representations. St…