5 papers · 1 filter
CHAMMI-75: Pre-training multi-channel models with heterogeneous microscopy images
Vidit Agrawal, John Peters, Tyler N. Thompson +13
Quantifying cell morphology using images and machine learning has proven to be a powerful tool to study the response of cells to treatments. However, models used to quantify cellul…
ChA-MAEViT: Unifying Channel-Aware Masked Autoencoders and Multi-Channel Vision Transformers for Improved Cross-Channel Learning
Chau Pham, Juan C. Caicedo, Bryan A. Plummer
Prior work using Masked Autoencoders (MAEs) typically relies on random patch masking based on the assumption that images have significant redundancies across different channels, al…
Enhancing Feature Diversity Boosts Channel-Adaptive Vision Transformers
Chau Pham, Bryan A. Plummer
Multi-Channel Imaging (MCI) contains an array of challenges for encoding useful feature representations not present in traditional images. For example, images from two different sa…
A Unified Framework for Connecting Noise Modeling to Boost Noise Detection
Siqi Wang, Chau Pham, Bryan A. Plummer
Noisy labels can impair model performance, making the study of learning with noisy labels an important topic. Two conventional approaches are noise modeling and noise detection. Ho…
CHAMMI: A benchmark for channel-adaptive models in microscopy imaging
Zitong Chen, Chau Pham, Siqi Wang +4
Most neural networks assume that input images have a fixed number of channels (three for RGB images). However, there are many settings where the number of channels may vary, such a…