2 papers
cond-mat.soft2025
Tracking Cluster Continuity and Dynamics in Time-Series Data: Application to Chromatin Polymer Simulations
Ryo Nakanishi, Koji Hukushima
This study presents an enhanced method for analyzing cluster dynamics, with a particular focus on tracking clusters' continuity over time using time-series data from molecular dyna…
cond-mat.soft2023
Emergence of compact-disordered phase in a polymer Potts model
Ryo Nakanishi, Koji Hukushima
One of the central problems in epigenetics is how epigenetic modification patterns and chromatin structure are regulated in the cell nucleus. The polymer Potts model, a recently st…