most citedFrom Words to Amino Acids: Does the Curse of Depth Persist?

1 citations · 1 across the 3 of their papers we have counts for

collaborators

7 papers

cs.LG2026

MesaNet: Sequence Modeling by Locally Optimal Test-Time Training

Johannes von Oswald, Nino Scherrer, Seijin Kobayashi +14

Sequence modeling is currently dominated by causal transformer architectures that use softmax self-attention. Although widely adopted, transformers require scaling memory and compu…

cs.LG20261 cited

From Words to Amino Acids: Does the Curse of Depth Persist?

Aleena Siji, Amir Mohammad Karimi Mamaghan, Ferdinand Kapl +9

Protein language models (PLMs) have become widely adopted as general-purpose models, demonstrating strong performance in protein engineering and de novo design. Like large language…

cs.NE2026

Evolution With Purpose: Hierarchy-Informed Optimization of Whole-Brain Models

Hormoz Shahrzad, Niharika Gajawelli, Kaitlin Maile +2

Evolutionary search is well suited for large-scale biophysical brain modeling, where many parameters with nonlinear interactions and no tractable gradients need to be optimized. St…

cs.CL2026

From Growing to Looping: A Unified View of Iterative Computation in LLMs

Ferdinand Kapl, Emmanouil Angelis, Kaitlin Maile +2

Looping, reusing a block of layers across depth, and depth growing, training shallow-to-deep models by duplicating middle layers, have both been linked to stronger reasoning, but t…

cs.LG2025

Emergent temporal abstractions in autoregressive models enable hierarchical reinforcement learning

Seijin Kobayashi, Yanick Schimpf, Maximilian Schlegel +12

Large-scale autoregressive models pretrained on next-token prediction and finetuned with reinforcement learning (RL) have achieved unprecedented success on many problem domains. Du…

cs.AI2025

Best Practices For Empirical Meta-Algorithmic Research: Guidelines from the COSEAL Research Network

Theresa Eimer, Lennart Schäpermeier, André Biedenkapp +15

Empirical research on meta-algorithmics, such as algorithm selection, configuration, and scheduling, often relies on extensive and thus computationally expensive experiments. With…